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ProStack - a platform for image processing and analysis

This work is supported by NIH Grant RR07801 and RFBR grants 09-04-001590-a, 08-04-00712-a, FASIE Contracts (№14069) and Research Scholarship (2009, 2010) of Science Committee of the St.Petersburg Government

Description

ProStack provides flexible and convenient platform for processing of experimental images. It implements various image processing methods as separate modules. Several modules can be joined in a complex image processing scenario by use of a graphical user interface and the intermediate results can be visualized during the workflow enactment. The designed workflow can be saved as a complex program module and re-used in other workflows.

Due to an open architecture ProStack can be easily integrated with any package for image processing. Currently we have integrated ProStack with the Ontology of image processing methods, what simplifies the selection of an appropriate method, as well as with the Matlab Image Processing Toolbox.

ProStack is scalable and supports distributed processing and analysis of data.

  1. K. Kozlov (2008). ProStack, the image analysis software to process and quantify patterns of gene expression, Proceedings of Helmholtz Russian-German Workshop on Systems Biology, February 27-29, 2008, Moscow, p.44.
  1. K. Kozlov (2008). ProStack: a new platform for image analysis, CSHL Conference "Computational Cell Biology", March 24 - 31, 2008.
  1. K.Kozlov, A.Pisarev, P. Baumann, M.Samsonova (2011). TERAPRO, A SYSTEM FOR PROCESSING OF LARGE-SCALE BIOMEDICAL IMAGES, Proceedings of the 8th Open German-Russian Workshop “Pattern Recognition and Image Understanding” (OGRW-8-2011), November 21-26, 2011, Nizhny Novgorod, Russia. pp. 150-153
  1. Козлов К.Н., Писарев А.С., Самсонова М.Г. (2011). Разработка сценариев обработки биомедицинских изображений в пакете ProStack. Сборник статей второй международной научно-практической конференции “Высокие технологии, фундаметальные и прикладные исследования в физиологии и медицине”, 26-28.10.2011, Санкт-Петербург, Россия, под редакцией А.П. Кудинова, Б.В.Крылова, Издательство Политехнического университета, сс. 207-209. Konstantin Kozlov, Andrey Pisarev, Maria Samsonova (2011). Workspaces for processing of biomedical images with ProStack.

Starting Points

Development